Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs17718148 | chr17:26103990 | C/T | 5.13E-7 | 215 | 9.1 | 10.23 | 6.08 | KM Plot |
| BLCA | rs17747294 | chr8:50753674 | C/G | 1.84E-5 | 214 | 10.33 | 8.72 | 0.98 | KM Plot |
| BLCA | rs17747567 | chr8:50758648 | C/A | 2.43E-5 | 216 | 10.53 | 9.05 | 1.87 | KM Plot |
| BLCA | rs17747790 | chr8:50766519 | C/A | 2.62E-5 | 215 | 10.6 | 9.05 | 1.87 | KM Plot |
| BLCA | rs17747896 | chr8:50768983 | C/T | 2.43E-5 | 216 | 10.53 | 9.05 | 1.87 | KM Plot |
| BLCA | rs17747929 | chr8:50769118 | A/T | 2.43E-5 | 216 | 10.53 | 9.05 | 1.87 | KM Plot |
| BLCA | rs17809326 | chr6:112089135 | C/T | 0 | 216 | 8.78 | 12.4 | 2.07 | KM Plot |
| BLCA | rs1783486 | chr11:65008917 | A/G | 0 | 215 | 2.73 | 12.4 | 8.87 | KM Plot |
| BLCA | rs17841176 | chr15:83232586 | T/C | 7.61E-8 | 205 | 10.12 | 6.83 | 1.35 | KM Plot |
| BLCA | rs17885743 | chr11:34464083 | G/A | 5.49E-5 | 214 | 10.67 | 8.47 | 3.3 | KM Plot |
| BLCA | rs1801494 | chr18:5243159 | G/T | 4.22E-8 | 215 | 9.08 | 12.43 | 4.73 | KM Plot |
| BLCA | rs1817561 | chr8:50851117 | G/C | 3.01E-5 | 213 | 1.87 | 9.03 | 10.13 | KM Plot |
| BLCA | rs182646 | chr8:50835576 | C/A | 1.59E-5 | 216 | 10.33 | 8.72 | 0.98 | KM Plot |
| BLCA | rs1844084 | chr3:112677038 | C/T | 2.01E-8 | 216 | 2.7 | 15.73 | 8.87 | KM Plot |
| BLCA | rs185744231 | chr15:41017166 | C/T | 2.15E-6 | 214 | 10.68 | 7.43 | 5.43 | KM Plot |